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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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499 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD2
ENSSSCG00000001835
ENSG00000140526
Abhydrolase domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
63.3
ACACA
ENSSSCG00000017694
ENSG00000278540
Acetyl-CoA carboxylase 1
Tissue enhanced
Detected in all
adipose tissue:
55.4
aorta:
56.6
ACAT2
ENSSSCG00000004049
ENSG00000120437
Acetyl-CoA acetyltransferase 2
Tissue enhanced
Detected in all
brain:
44.7
cornea:
51.1
ACKR1
ENSSSCG00000036223
ENSG00000213088
Atypical chemokine receptor 1
Tissue enhanced
Detected in many
cartilage:
39.6
mesothelial tissue:
62.6
ACLY
ENSSSCG00000017421
ENSG00000131473
ATP-citrate synthase isoform 2
Tissue enhanced
Detected in all
aorta:
90.5
pineal gland:
90.2
ACOT8
ENSSSCG00000007426
ENSG00000101473
Acyl-CoA thioesterase 8
Low tissue specificity
Detected in all
ACSL4
ENSSSCG00000012583
ENSG00000068366
Long-chain-fatty-acid--CoA ligase 4
Tissue enriched
Detected in all
ovary:
135.8
ACTR1B
ENSSSCG00000008194
ENSG00000115073
ARP1 actin related protein 1 homolog B
Low tissue specificity
Detected in all
ACVR1
ENSSSCG00000015874
ENSG00000115170
Activin A receptor type 1
Tissue enhanced
Detected in all
cartilage:
70.9
ACYP2
ENSSSCG00000025224
ENSG00000170634
Acylphosphatase 2
Tissue enhanced
Detected in many
brain:
31.1
skeletal muscle:
48.5
ADAMTS4
ENSSSCG00000006359
ENSG00000158859
ADAM metallopeptidase with thrombospondin type 1 motif 4
Group enriched
Detected in many
aorta:
56.1
mesothelial tissue:
84.5
ADSSL1
ENSSSCG00000037334
ENSG00000185100
Adenylosuccinate synthetase isozyme 1
Tissue enhanced
Detected in many
skeletal muscle:
122.1
AGMO
ENSSSCG00000015356
ENSG00000187546
Alkylglycerol monooxygenase
Tissue enhanced
Detected in some
brain:
10.3
lens:
16.9
liver:
57.3
AIFM2
ENSSSCG00000010258
ENSG00000042286
Apoptosis inducing factor, mitochondria associated 2
Tissue enhanced
Detected in all
adipose tissue:
40.1
testis:
38.3
AK1
ENSSSCG00000005627
ENSG00000106992
Adenylate kinase isoenzyme 1
Tissue enriched
Detected in many
skeletal muscle:
215.4
ALAS2
ENSSSCG00000012347
ENSG00000158578
5'-aminolevulinate synthase 2
Tissue enriched
Detected in many
dura mater:
84.4
ALDH1L1
ENSSSCG00000030626
ENSG00000144908
Cytosolic 10-formyltetrahydrofolate dehydrogenase
Group enriched
Detected in many
kidney:
42.9
liver:
148.3
ALDH1L2
ENSSSCG00000000839
ENSG00000136010
Aldehyde dehydrogenase 1 family member L2
Low tissue specificity
Detected in all
ALDH4A1
ENSSSCG00000024752
ENSG00000159423
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
kidney:
61.1
liver:
78.9
AMOT
ENSSSCG00000012591
ENSG00000126016
Angiomotin
Tissue enhanced
Detected in all
epididymis:
59.2
male glands:
93.4
skeletal muscle:
52.8
ANAPC15
ENSSSCG00000014806
ENSG00000110200
Anaphase promoting complex subunit 15
Low tissue specificity
Detected in all
ANK1
ENSSSCG00000007022
ENSG00000029534
Ankyrin 1
Group enriched
Detected in many
brain:
25.8
heart:
50.3
skeletal muscle:
67.1
ANKRD13C
ENSSSCG00000003790
ENSG00000118454
Ankyrin repeat domain 13C
Low tissue specificity
Detected in all
ANKRD50
ENSSSCG00000022173
ENSG00000151458
Ankyrin repeat domain 50
Low tissue specificity
Detected in all
ANO10
ENSSSCG00000011296
ENSG00000160746
Anoctamin 10
Low tissue specificity
Detected in all
ANXA6
ENSSSCG00000017089
ENSG00000197043
Annexin A6
Low tissue specificity
Detected in all
AP1M1
ENSSSCG00000013856
ENSG00000072958
AP-1 complex subunit mu-1
Tissue enhanced
Detected in all
testis:
85.0
APOA1
ENSSSCG00000030921
ENSG00000118137
Apolipoprotein A-I preproprotein
Group enriched
Detected in many
liver:
330.7
vagus nerve:
134.4
APOLD1
ENSSSCG00000036787
ENSG00000178878
Apolipoprotein L domain containing 1
Tissue enhanced
Detected in many
aorta:
38.5
bone marrow:
40.5
cartilage:
43.0
ARF5
ENSSSCG00000016593
ENSG00000004059
ADP-ribosylation factor 5
Low tissue specificity
Detected in all
ARHGEF12
ENSSSCG00000015129
ENSG00000196914
Rho guanine nucleotide exchange factor 12
Low tissue specificity
Detected in all
ARHGEF17
ENSSSCG00000014822
ENSG00000110237
Rho guanine nucleotide exchange factor 17
Low tissue specificity
Detected in all
ARHGEF25
ENSSSCG00000000435
ENSG00000240771
Rho guanine nucleotide exchange factor 25
Tissue enhanced
Detected in all
cervix:
47.4
ARL4D
ENSSSCG00000017380
ENSG00000175906
ADP ribosylation factor like GTPase 4D
Tissue enhanced
Detected in many
dura mater:
20.3
kidney:
25.1
ARVCF
ENSSSCG00000010133
ENSG00000099889
ARVCF, delta catenin family member
Tissue enriched
Detected in all
lens:
141.1
ASB18
ENSSSCG00000016318
ENSG00000182177
Ankyrin repeat and SOCS box containing 18
Group enriched
Detected in some
heart:
24.6
skeletal muscle:
30.5
ASPDH
ENSSSCG00000023211
ENSG00000204653
Putative L-aspartate dehydrogenase
Group enriched
Detected in some
kidney:
30.5
liver:
45.5
ATG7
ENSSSCG00000011575
ENSG00000197548
Ubiquitin-like modifier-activating enzyme ATG7
Low tissue specificity
Detected in all
ATL2
ENSSSCG00000008487
ENSG00000119787
Atlastin GTPase 2
Low tissue specificity
Detected in all
ATP2A2
ENSSSCG00000034386
ENSG00000174437
Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
Tissue enhanced
Detected in all
heart:
125.0
skeletal muscle:
197.8
ATP9B
ENSSSCG00000004857
ENSG00000166377
ATPase phospholipid transporting 9B (putative)
Low tissue specificity
Detected in all
B3GLCT
ENSSSCG00000009335
ENSG00000187676
Beta 3-glucosyltransferase
Low tissue specificity
Detected in all
B4GALT2
ENSSSCG00000026793
ENSG00000117411
Beta-1,4-galactosyltransferase 2
Low tissue specificity
Detected in all
BAG2
ENSSSCG00000033526
ENSG00000112208
BCL2 associated athanogene 2
Tissue enhanced
Detected in all
smooth muscle:
67.5
C1orf198
ENSSSCG00000010181
ENSG00000119280
Chromosome 1 open reading frame 198
Tissue enhanced
Detected in all
brain:
51.1
C2orf88
ENSSSCG00000033941
ENSG00000187699
Chromosome 2 open reading frame 88
Tissue enhanced
Detected in all
heart:
57.9
C3orf70
ENSSSCG00000038724
ENSG00000187068
Chromosome 3 open reading frame 70
Tissue enhanced
Detected in many
cervix:
28.9
C6orf106
ENSSSCG00000001527
ENSG00000196821
Uncharacterized protein C6orf106 homolog
Low tissue specificity
Detected in all
C6orf89
ENSSSCG00000035341
ENSG00000198663
Chromosome 6 open reading frame 89
Low tissue specificity
Detected in all
CA14
ENSSSCG00000027875
ENSG00000118298
Carbonic anhydrase 14
Tissue enhanced
Detected in all
brain:
35.7
skeletal muscle:
43.4
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